FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830258

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830258
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14967504
Sequences flagged as poor quality0
Sequence length51-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1988600.015.766584120
TCATTAA730550.010.298245120
CGTATCA969100.09.84957120
GTATCAT936500.09.686338120
CATTAAA700300.09.620802120
GCGTCGG104050.09.513877120
ATCATTA824200.09.361038120
TCTCGGG39200.09.33597120
TATCATT944250.09.308213120
CCGTATC1094100.08.927155120
GCCGTAT1170400.08.760389120
CGCCGTA1269450.08.653432120
ATTAAAA795700.08.497481120
TCGCCGT1400700.08.373698120
GGTCGCC1542750.08.271563120
TTAAAAA771350.08.174607120
GTCGCCG1488850.08.035073120
TGGTCGC1627350.07.885795120
GTGGTCG1749450.07.7846656120
GGTGGTC1888600.07.531946120
Produced by FastQC (version 0.11.5)