FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13264247
Sequences flagged as poor quality0
Sequence length50-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC142900.062.46799120
GAGCACA214350.039.423027120
AGAGCAC282050.034.656876120
AAGAGCA443000.021.055655118-119
GAAGAGC493800.019.306467120
GGAAGAG606200.015.521547118-119
TCGGAAG682700.014.337223120
CGGAAGA700850.013.588317116-117
ATCGGAA810950.012.769871120
GATCGGA822250.012.546762120
AGATCGG919200.011.415099120
TAGATCG236450.010.589525118-119
CTAGATC57500.09.582382118-119
TTAGATC87000.08.844065116-117
CAGATCG354900.08.145193120
GAGATCG358250.08.050813120
AAGATCG315300.07.961985118-119
CACACGT45100.07.9577417120
CCTAGAT22450.07.8424573114-115
CACGTCT47100.07.7583756120
Produced by FastQC (version 0.11.5)