FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12872400
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG78900.010.417503120
ATCTCGG313850.09.672716120
TAGATCT359300.09.551221120
TCGGTGG252350.09.3672695120
GTGGTCG193450.09.366091120
GAGTGTA539250.09.156506120
AGATCTC350600.09.137963120
AGTGTAG497500.09.056637120
GTGTAGA487450.08.837196120
AGAGTGT588050.08.784337120
CTCGGTG269250.08.712467120
GATCTCG352250.08.430906120
GGTCGCC180950.08.3553120
TCTCGGT283900.08.326279120
CGGTGGT247950.08.057498120
GGTGGTC213350.08.042545120
GTAGATC517950.07.9924765120
TGGTCGC172800.07.985538120
AAGAGTG656200.07.9177494120
GTAGGGA992650.07.7846637120
Produced by FastQC (version 0.11.5)