FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13142460
Sequences flagged as poor quality0
Sequence length50-126
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC173000.084.000114120
GAGCACA280500.051.782032120
AGAGCAC373450.038.84702118-119
AAGAGCA572900.025.778273120
GAAGAGC648600.023.211315120
GGAAGAG784350.019.043596118-119
CGGAAGA901800.016.380829118-119
TCGGAAG920800.016.124475116-117
ATCGGAA1074250.013.741244116-117
GATCGGA1093800.013.6331835114-115
CACGTCT42600.013.113812120
AGATCGG1197200.012.357068114-115
CACACGT46700.011.809128120
TAGATCG284100.011.664387112-113
CCCCCCC7803.099558E-911.5685831
CTAGATC76150.010.76187112-113
ACACGTC53200.010.231655120
GAGATCG433350.010.182313112-113
CAGATCG447150.09.707999112-113
ACGTCTG60800.09.188296120
Produced by FastQC (version 0.11.5)