FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13288468
Sequences flagged as poor quality0
Sequence length50-126
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA3988200.016.190342120
TCCGATC69000.013.3908063
CCGATCT63300.012.5113824
CCCTACA10701.2914825E-1010.6577391
CCCCCAA9201.5463229E-810.4382431
CTTCCGA96400.010.3976371
TCATTAA1279450.010.115021120
CATTAAA1200600.010.11468120
CGGTGGG15050.09.966518120
CGTATCA1667400.09.683087120
ATCATTA1398150.09.681113120
GTATCAT1563150.09.530508120
TATCATT1555950.09.2507120
CGATCTA19850.09.0676735
CCGTATC1811000.09.054431120
ATTAAAA1290050.08.878495120
CCTCGCG39500.08.8130481
CCTCCAC32400.08.706591
CGCCGTA2104650.08.6805525120
CCCCTCA7651.9467408E-48.6303131
Produced by FastQC (version 0.11.5)