FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14126772
Sequences flagged as poor quality0
Sequence length50-126
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC144950.073.17721120
GAGCACA226950.047.619164120
AGAGCAC312200.036.12572120
AAGAGCA498900.023.52539120
GAAGAGC559300.021.192606120
GGAAGAG717500.017.02377120
TCGGAAG878950.014.734089120
CGGAAGA877900.013.860079118-119
GATCGGA1011200.012.839009120
ATCGGAA1025450.012.496906120
AGATCGG1113800.012.096834120
TAGATCG325650.010.900467118-119
CTAGATC72100.010.374023116-117
AAGATCG365100.09.866858120
GAGATCG374350.09.847245120
TTAGATC115450.09.411196118-119
CAGATCG313200.08.95584118-119
ATAGATC152900.08.782383120
CACGTCT53400.08.220991120
TGAGATC140850.07.6222277116-117
Produced by FastQC (version 0.11.5)