Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004830337 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13787010 |
Sequences flagged as poor quality | 0 |
Sequence length | 50-126 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGCACAC | 20505 | 0.0 | 121.28199 | 120 |
GAGCACA | 35405 | 0.0 | 69.543205 | 120 |
AGAGCAC | 49660 | 0.0 | 51.055676 | 120 |
AAGAGCA | 75510 | 0.0 | 34.021454 | 120 |
GAAGAGC | 85670 | 0.0 | 29.934933 | 118-119 |
CCGATCT | 11155 | 0.0 | 25.558378 | 4 |
GGAAGAG | 106105 | 0.0 | 24.227879 | 118-119 |
CTTCCGA | 13435 | 0.0 | 22.494183 | 1 |
CGATCTA | 2875 | 0.0 | 21.589756 | 5 |
TCCGATC | 13690 | 0.0 | 21.286852 | 3 |
CGGAAGA | 126415 | 0.0 | 20.457478 | 116-117 |
TCGGAAG | 129800 | 0.0 | 19.737133 | 116-117 |
ATCGGAA | 151480 | 0.0 | 17.05772 | 114-115 |
GATCGGA | 155475 | 0.0 | 16.47194 | 114-115 |
AGATCGG | 165925 | 0.0 | 15.438504 | 112-113 |
TTCCGAT | 20885 | 0.0 | 14.658638 | 2 |
TAGATCG | 39860 | 0.0 | 14.647596 | 112-113 |
CAGATCG | 53905 | 0.0 | 12.549083 | 112-113 |
CACACGT | 3780 | 0.0 | 12.481726 | 118-119 |
CTAGATC | 5695 | 0.0 | 12.313414 | 110-111 |