FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16677746
Sequences flagged as poor quality0
Sequence length60-126
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCCCCC2351.590162E-417.8717731
AAAAAAA2472950.012.485134120
TCTCGGG31000.011.806112120
GCGTCGG91450.011.218924120
CGTATCA995300.09.735477120
CGCCGTA1286950.09.650447120
CCGTATC1100700.09.550012120
GCCGTAT1194050.09.150106120
GTATCAT1000150.08.956399120
TGGTCGC1683750.08.801529120
GGTCGCC1569800.08.683659120
GTCGCCG1502950.08.534968120
TCGCCGT1415200.08.487602120
TCATTAA912850.08.320952120
CATTAAA885950.08.20113120
GTGGTCG1813450.08.17865120
GGTGGTC1947300.08.143349120
ATCATTA1010200.08.047679120
TATCATT1136800.07.768953120
TCGGTGG2236950.07.5556064120
Produced by FastQC (version 0.11.5)