FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11853917
Sequences flagged as poor quality0
Sequence length126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT193000.08.249385120
GTAGATC260150.08.1523695120
GAGTGTA283150.08.147936120
GTGTAGA267300.08.0916395120
GGTCGCC97200.07.9736357120
AGATCTC211100.07.9120593120
AGTGTAG260000.07.8797784120
TGGTCGC99400.07.8575997120
AGAGTGT319650.07.8378024120
TAGGGAA467900.07.8069882120
CGTGTAG593000.07.5379143120
ATCTCGG177250.07.524882120
GTGGTCG106050.07.4781857120
TGTAGGG522750.07.4360657120
GTAGGGA481900.07.227559118-119
AAGAGTG360500.07.1663194120
GTGTAGG565800.07.082651120
TCGTGTA637150.06.930724120
GTCGCCG112950.06.914967120
GTCGTGT659450.06.7555537118-119
Produced by FastQC (version 0.11.5)