FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11853917
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC109050.048.353046120
GAGCACA150350.034.526127120
AGAGCAC191950.028.159391120
GAAGAGC332200.017.80697120
AAGAGCA328650.017.232574120
GGAAGAG441350.013.759987120
TCGGAAG471150.013.090239120
CGGAAGA507550.012.350039120
GATCGGA568400.011.825907120
AGATCGG606600.010.966944120
ATCGGAA595300.010.605984118-119
TAGATCG153750.010.588185118-119
CTAGATC38750.09.570116118-119
TTAGATC78500.08.687621116-117
GCTAGAT17302.5465852E-118.375404120
AAGATCG302950.08.317888120
ACACGTC28200.08.042248120
TCTAGAT23000.07.395372120
CACACGT29100.06.9118433118-119
GAGATCG240350.06.825481118-119
Produced by FastQC (version 0.11.5)