FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14167433
Sequences flagged as poor quality0
Sequence length50-126
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC183850.084.55818120
GAGCACA299150.050.87403120
AGAGCAC404500.039.07952120
AAGAGCA592300.026.460712118-119
GAAGAGC690900.022.795662120
GGAAGAG819400.019.15854116-117
CGGAAGA972200.016.13621116-117
TCGGAAG982300.015.962399114-115
ATCGGAA1141900.013.756042112-113
TCCGATC99900.013.376773
GATCGGA1190450.013.237693112-113
AGATCGG1320150.011.901414112-113
CTTCCGA115250.011.608621
TAGATCG306600.011.134661118-119
CTAGATC72500.010.958214112-113
CCGATCT127250.010.3698634
TTAGATC90100.09.623446114-115
CGATCTA28000.09.1858355
CACGTCT48250.09.037794120
GAGATCG569350.09.03414110-111
Produced by FastQC (version 0.11.5)