FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20116178
Sequences flagged as poor quality0
Sequence length59-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1436100.011.567818120
CGCCGTA761000.08.403994120
GTGGTCG1018650.08.32794120
GCCGTAT751050.08.243735120
GTCGCCG887200.08.243191120
CGTATCA637700.08.222582120
TCATTAA507850.08.139485120
TGGTCGC940200.08.020994120
GGTCGCC907700.07.984317120
TCGGTGG1286750.07.88429120
TCGCCGT841550.07.849113120
CCGTATC743950.07.7014556120
GGTGGTC1099000.07.609888120
CGGTGGT1228200.07.581162120
GTATCAT637950.07.5704627120
CATTAAA506050.07.4333963120
CTCGGTG1333900.07.29526118-119
TCTCGGT1415050.07.118559120
TATCATT693050.06.9253120
ATCATTA586850.06.8699784120
Produced by FastQC (version 0.11.5)