FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11929131
Sequences flagged as poor quality0
Sequence length51-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTGTAG260100.010.541229120
TAGATCT184600.09.847508120
GAGTGTA285700.09.743683120
AGAGTGT320350.09.569991120
TAGGGAA550600.09.218272120
GTAGGGA585500.09.181138120
GTGTAGA260600.09.116669120
AAGAGTG364950.09.107346120
AAAGAGT436800.08.96904120
AGATCTC193950.08.84691120
TGTAGGG629450.08.702117120
GTGTAGG694050.08.531822120
GTAGATC283400.08.4678955120
ATCTCGG181050.08.383732120
CTCGGTG167050.08.11666120
CGTGTAG736850.08.093245120
TCGTGTA793100.08.071456120
GATCTCG205650.08.051851120
AGGGAAA604900.08.033722120
GGGAAAG539850.07.979336120
Produced by FastQC (version 0.11.5)