FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11253890
Sequences flagged as poor quality0
Sequence length77-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGCGT4202.910383E-1012.14173790-91
AAAAAAA657950.010.476661120
GCGTCGG84900.010.316702120
CGTATCA266000.09.51758120
TGGTCGC444850.09.197432120
GCCGTAT341500.08.818786120
GTGGTCG495250.08.721752120
GGTCGCC434750.08.638344120
GGTGGTC531750.08.608209120
GCTAGCG6051.16066076E-78.4288888-89
CGCCGTA372550.08.293129120
CCGTATC320200.08.262529120
GTATCAT283050.08.160059120
TAGATCT859800.07.9752545120
TGCTAGC6453.2407843E-77.906159488-89
CGGTGGT593650.07.8925314120
TCGGTGG620600.07.888131120
GTCGCCG457000.07.7583075120
TCATTAA224700.07.662572120
ATCATTA259800.07.5509977120
Produced by FastQC (version 0.11.5)