FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14359429
Sequences flagged as poor quality0
Sequence length50-126
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1368450.014.902393120
ATCATTA572750.010.894368120
TCATTAA501600.010.657467120
CATTAAA483450.010.226086120
GTATCAT670900.010.069651120
TATCATT662150.09.740603120
CGTATCA703450.09.603708120
CCGTATC818350.08.973795120
GCCGTAT881400.08.781132120
CGCCGTA976450.08.602245120
GTGGTCG1309200.08.340637120
TTAAAAA527600.08.244552120
GGTCGCC1170900.08.203616120
ATTAAAA543650.08.122547120
TGGTCGC1203550.07.866411120
GCGTCGG154350.07.5798707120
TCGCCGT1107500.07.5789275120
GTCGCCG1197650.07.549482120
GGTGGTC1396150.07.5031905120
TCGGTGG1590400.07.333709120
Produced by FastQC (version 0.11.5)