FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15103728
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA2072300.014.887438120
TCTCGGG28250.012.105895120
CCGATCT90650.011.7149834
CGATCTA23750.011.3680285
TCATTAA801650.010.365864120
TCCGATC107300.010.1767213
GCGTCGG102950.09.965756120
CGTATCA1040550.09.952183120
CATTAAA762800.09.816223120
CCGTATC1160850.09.74262120
GTATCAT1001150.09.702602120
ATCATTA895850.09.657629120
GCCGTAT1240500.09.503997120
CTTCCGA122100.09.4837021
TATCATT1033700.09.182321120
CGCCGTA1320950.09.04781120
GTCGCCG1573050.08.566585120
TCGCCGT1458400.08.557112120
GGTCGCC1641850.08.488995120
TGGTCGC1750400.08.168217120
Produced by FastQC (version 0.11.5)