FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15796306
Sequences flagged as poor quality0
Sequence length50-126
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC149400.072.76806120
GAGCACA238750.048.313793120
AGAGCAC325700.035.633293120
AAGAGCA522350.023.056795120
GAAGAGC582350.020.35291118-119
GGAAGAG753800.016.062778120
TCGGAAG890200.014.520405120
CCCCCCC5001.5498154E-714.03840351
CGGAAGA899100.014.032834120
GATCGGA1023100.012.986739120
ATCGGAA1036050.012.40534118-119
CCCCCCA13050.011.6538471
AGATCGG1124600.011.597253118-119
GATCCTG73500.011.2211721
TAGATCG291050.010.4736118-119
GAGATCG427350.010.105261118-119
CTAGATC68100.09.679703118-119
GATCCTA34100.09.6059461
TTAGATC97650.09.365588120
CCCCCCG8801.4050456E-69.305761
Produced by FastQC (version 0.11.5)