FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14477208
Sequences flagged as poor quality0
Sequence length51-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA856900.011.097424120
GTGGTCG626900.08.718528120
CGTATCA360450.08.505482120
TGGTCGC571850.08.4142475120
GGTCGCC554000.08.327979120
TCATTAA295200.08.312469120
GCCGTAT453150.08.010072120
GGTGGTC680350.07.9453945120
TCGGTGG785050.07.94038120
CGCCGTA486800.07.924712120
CTCGGTG840650.07.850558120
GTATCAT374850.07.8266225120
ATCTCGG945800.07.555018120
CGGTGGT755250.07.4910727120
TCTCGGT873150.07.4896355120
GTCGCCG589100.07.4855094120
CCGTATC438450.07.4439235120
CATTAAA304450.07.3898964120
TAGATCT1078200.07.272761120
ATCATTA343450.07.1621494120
Produced by FastQC (version 0.11.5)