FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13314605
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC121700.051.68637120
GAGCACA190650.033.69774120
AGAGCAC230050.027.829565118-119
GAAGAGC407650.016.857477120
AAGAGCA387650.016.754267120
GGAAGAG477100.015.274499120
TCGGAAG518850.014.119337120
CGGAAGA532550.013.252153118-119
GATCGGA613750.012.00924118-119
ATCGGAA629350.011.752023120
AGATCGG672150.010.946792118-119
TAGATCG187100.010.47218114-115
CTAGATC46150.09.696117120
TTAGATC68150.08.442177118-119
GAGATCG272900.07.9877114120
CAGATCG268200.07.6392116-117
AAGATCG226900.07.071588118-119
CGCTAGA8156.37252E-77.0593305116-117
CACGTCT41550.06.769447120
ATAGATC120800.06.6942825114-115
Produced by FastQC (version 0.11.5)