FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14832893
Sequences flagged as poor quality0
Sequence length56-126
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG75500.015.336222120
CCCCCCA4103.334917E-614.6329851
TCTCGGG21650.011.361455120
TGGTCGC492000.010.462373120
CGTATCA286250.010.26972120
CGCCGTA389450.010.259603120
GTGGTCG534900.09.993397120
GGTGGTC580000.09.930046120
GGTCGCC455750.09.912343120
GCCGTAT354300.09.668809120
CCGTATC324250.09.473228120
GTCGCCG461100.09.224846120
CTCGGTG757600.09.090964120
TCGCCGT457950.09.07869120
CGGTGGT643000.09.022429120
TCGGTGG693800.09.018992120
GATCTCG967400.08.979879120
TCTCGGT813450.08.89456120
AGATCTC1026200.08.821963120
ATCTCGG880050.08.282796120
Produced by FastQC (version 0.11.5)