FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11677883
Sequences flagged as poor quality0
Sequence length59-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTGTAG135550.09.825498120
TAGATCT97600.09.77346120
TAGGGAA271750.09.559153120
GTGTAGA145100.09.550929120
GTAGGGA282700.09.485992120
GAGTGTA148650.09.161404118-119
TGTAGGG309350.09.037262120
GTCGTGT421650.09.00643120
GTGTAGG349100.08.901865120
AGAGTGT173700.08.8763485120
TCGTGTA401050.08.721097120
CGTCGTG472050.08.260882120
CGTGTAG370400.08.227991120
AGCGTCG536700.07.9253120
GAGCGTC587450.07.812528120
GTAGATC158000.07.74594120
GCGTCGT501950.07.7209926118-119
AAGAGTG202250.07.4008756118-119
AGAGCGT643900.07.1648808120
AAGAGCG694550.06.9965277120
Produced by FastQC (version 0.11.5)