FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15088537
Sequences flagged as poor quality0
Sequence length60-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGTAGA622700.09.220875120
AGTGTAG644950.09.1818495120
TAGATCT465350.09.167036120
AGAGTGT752050.09.134774120
TCGGTGG329500.08.904151120
AGATCTC453500.08.890599120
GATCTCG455750.08.859872120
ATCTCGG404750.08.745894120
CTCGGTG359450.08.512767120
GTAGATC600650.08.430631120
GAGTGTA686500.08.416175118-119
TGGTCGC242450.08.364376120
TCTCGGT365050.08.250692120
GGTGGTC288150.08.162187120
GTGGTCG254650.07.916526120
AAGAGTG827200.07.782664120
TAGGGAA1175550.07.620049120
TGTAGAT644100.07.4054747120
GGTCGCC257350.07.2273083120
GAAAGAG1057600.07.1707516120
Produced by FastQC (version 0.11.5)