FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13907687
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC185150.082.73012120
GAGCACA283100.054.603603120
AGAGCAC389600.039.867516120
AAGAGCA590400.026.652767118-119
GAAGAGC663350.023.402996116-117
GGAAGAG820450.019.24693116-117
TCCGATC96100.016.996013
CGATCTA22700.016.585615
CCGATCT94600.016.504654
TCGGAAG972700.016.130798114-115
CGGAAGA981050.016.053928114-115
GATCGGA1160050.013.583461112-113
ATCGGAA1159650.013.546613112-113
CTTCCGA123100.013.4204151
AGATCGG1267000.012.416624110-111
TAGATCG363600.011.972789114-115
CTAGATC81350.010.702658114-115
GAGATCG399850.010.127989110-111
AAGATCG433400.010.104969118-119
CACGTCT53200.09.750409118-119
Produced by FastQC (version 0.11.5)