FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12225647
Sequences flagged as poor quality0
Sequence length53-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA910200.010.150366120
GCGTCGG73400.09.726323120
CGTATCA312000.08.90275120
GCCGTAT377500.08.740645120
GTGGTCG530350.08.133249120
GGTCGCC474550.08.103522120
GGTGGTC577450.08.082822120
TGGTCGC493350.08.013608120
CGCCGTA396600.07.971787120
CCGTATC349800.07.8034987120
GTCGCCG474700.07.73446120
GTATCAT340750.07.6938434120
CGGTGGT634750.07.5516496120
CTCGGTG705900.07.4788923120
TCGCCGT461700.07.315538120
TCGGTGG663550.07.3052573120
GATCTCG850750.07.24213120
TCTCGGT747750.07.1565914120
ATCTCGG792300.07.079779120
TAGATCT914350.06.968027120
Produced by FastQC (version 0.11.5)