FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14378903
Sequences flagged as poor quality0
Sequence length50-126
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC179150.069.59715120
GAGCACA286100.045.23917120
AGAGCAC377400.033.653526118-119
AAGAGCA567200.022.845505118-119
GAAGAGC646300.020.403845120
GGAAGAG753150.017.608158120
CGGAAGA879850.014.958194118-119
TCGGAAG891350.014.763992120
ATCGGAA1047200.012.974619120
GATCGGA1077450.012.786542120
TAGATCG257550.011.767182120
AGATCGG1193550.011.599564120
CTAGATC54350.09.854942120
GAGATCG532700.09.240182120
CAGATCG599700.08.942706120
TTAGATC61000.08.596864118-119
ATAGATC140050.08.358555118-119
CACACGT46450.08.303426118-119
ACACGTC62350.08.264255120
AGAGATC197500.07.6896663120
Produced by FastQC (version 0.11.5)