FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14417848
Sequences flagged as poor quality0
Sequence length54-126
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA319200.09.810994120
GGTGGTC618500.09.447668120
TGGTCGC524350.09.439261120
GGTCGCC501700.09.422963120
GTGGTCG570050.09.419231120
CGCCGTA435650.09.295471120
CCGTATC372700.09.07873120
GCCGTAT406350.09.050354120
CGGTGGT687250.08.450181120
TCGGTGG730500.08.311237120
CTCGGTG786150.08.302881120
GTCGCCG523850.08.222859120
AAAAAAA1010850.07.9409924120
GATCCAT71650.07.7883581
GTATCAT359650.07.7400417120
TCGCCGT508800.07.7055535118-119
GATCCAA43000.07.67491151
GATCCTA24250.07.67059661
TCTCGGT835650.07.6028585120
ATCTCGG906700.07.5430427120
Produced by FastQC (version 0.11.5)