FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14701567
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC183300.072.18398120
GAGCACA303350.044.244297120
AGAGCAC394900.034.554703120
AAGAGCA585050.023.20792118-119
GAAGAGC653050.021.3425120
GGAAGAG803550.017.154686118-119
TCGGAAG948200.015.071626120
CGGAAGA936100.014.910904120
GATCGGA1100650.012.933864118-119
ATCGGAA1102050.012.8928175118-119
AGATCGG1217250.011.7682295120
TAGATCG351350.010.906248116-117
CTAGATC74350.010.854111108-109
GAGATCG436550.09.537639120
TTAGATC107500.09.351206120
CAGATCG376100.09.331944118-119
AAGATCG323500.09.276964116-117
GTAGATC138500.08.593943118-119
TCTAGAT31950.08.5036125120
CCTAGAT26800.08.09736108-109
Produced by FastQC (version 0.11.5)