FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14599293
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC178700.078.70608120
GAGCACA285700.051.017166120
AGAGCAC394900.036.504513118-119
AAGAGCA606350.024.15636118-119
GAAGAGC677700.021.497406120
GGAAGAG838700.017.646795120
CGGAAGA992800.015.134097120
TCGGAAG1001700.014.867132118-119
ATCGGAA1191300.013.36135120
GATCGGA1213100.012.703032118-119
AGATCGG1326100.011.80548118-119
ACACGTC54300.010.787267120
TAGATCG328800.010.647477118-119
CTAGATC80000.010.557652116-117
AAGATCG520400.09.279928116-117
CACACGT50800.09.18422118-119
TTAGATC134100.09.1682116-117
CACGTCT54850.09.002783118-119
GAGATCG458700.08.902174116-117
CAGATCG409300.08.412306116-117
Produced by FastQC (version 0.11.5)