FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12024523
Sequences flagged as poor quality0
Sequence length50-126
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC133750.070.220184120
GAGCACA208000.045.627243120
AGAGCAC275700.034.27959118-119
AAGAGCA439250.022.054638120
GAAGAGC463600.020.449509116-117
GGAAGAG580050.017.086123120
TCGGAAG682200.015.028337120
CGGAAGA679050.014.2273118-119
GATCGGA817450.012.505454118-119
ATCGGAA823900.012.459602120
AGATCGG898000.011.760598120
TAGATCG225250.010.613245118-119
CTAGATC57200.010.104113118-119
AAGATCG425750.010.058023120
GAGATCG284650.08.606116116-117
TTAGATC108650.08.371733114-115
ACACGTC34000.08.113161120
CCTAGAT23550.08.087733120
CAGATCG237750.07.624303118-119
TAAGATC177900.07.586604118-119
Produced by FastQC (version 0.11.5)