FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12014741
Sequences flagged as poor quality0
Sequence length50-126
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC129950.076.88437120
GAGCACA210800.049.07135120
AGAGCAC287900.035.488735118-119
AAGAGCA451900.024.009035120
GAAGAGC494100.021.329435118-119
GGAAGAG591650.018.01729118-119
CGGAAGA688950.016.029537120
TCGGAAG697050.015.306883120
ATCGGAA827350.013.285758118-119
GATCGGA841850.012.7234125120
AGATCGG927550.011.883757120
TAGATCG228550.010.732181110-111
CTAGATC53500.09.826886114-115
GAGATCG357200.08.985831118-119
TTAGATC96950.08.64143120
AAGATCG329750.08.622014116-117
CAGATCG329250.08.426887112-113
ACACGTC36650.07.7456503120
AGAGATC134750.07.289727118-119
ATAGATC123700.07.271543110-111
Produced by FastQC (version 0.11.5)