FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13839202
Sequences flagged as poor quality0
Sequence length54-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGTG453400.08.912814120
TCTCGGT477200.08.745118120
GGTCGCC298900.08.618123120
TCGGTGG425600.08.507403120
GTGGTCG326950.08.503172120
ATCTCGG523300.08.330426120
GATCTCG562150.08.203332120
AGATCTC575800.08.165286120
TGGTCGC299200.08.141455118-119
TAGATCT597300.08.03222120
CGGTGGT417100.07.917787120
GGTGGTC357350.07.847014120
GTGTAGA770200.07.655777120
GAGTGTA848100.07.434017120
AGTGTAG795700.07.4255233120
GTAGATC754000.07.350412120
CGTATCA212200.07.328848120
TGTAGAT797800.07.2705026120
GTCGCCG321350.07.249945120
AGAGTGT907400.06.994514120
Produced by FastQC (version 0.11.5)