FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11998411
Sequences flagged as poor quality0
Sequence length52-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGTG341050.09.147633120
TGGTCGC227950.08.632919120
GGTGGTC278550.08.443186120
GGTCGCC224650.08.412548120
TCTCGGT363450.08.13815120
GTGGTCG251300.08.045645120
ATCTCGG389850.07.8640594118-119
CGTATCA175600.07.8582664120
GATCTCG427050.07.8533783120
CGCCGTA199800.07.747251120
AGATCTC440050.07.7031765120
GTCGCCG242500.07.6201305120
TCGGTGG327350.07.569395120
TAGATCT446850.07.478541118-119
GTGTAGA565600.07.4146595120
GCCGTAT202650.07.3126326120
GCGTCGG58650.07.262962120
CGGTGGT324000.07.1847253120
GAGTGTA618800.07.048676120
AGTGTAG580100.06.908711120
Produced by FastQC (version 0.11.5)