FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11998411
Sequences flagged as poor quality0
Sequence length50-126
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC108750.062.518234120
GAGCACA169800.039.54084120
AGAGCAC215400.032.442326120
AAGAGCA354950.020.459557120
GAAGAGC377000.019.366758120
GGAAGAG479350.015.341605118-119
TCGGAAG533100.014.246642120
CGGAAGA555850.013.359203118-119
GATCGGA630150.011.908192118-119
ATCGGAA646150.011.598186118-119
AGATCGG687700.011.043893120
CTAGATC41400.010.39341118-119
TAGATCG168950.010.380267118-119
TTAGATC71500.09.216872120
GAGATCG255450.08.301292120
AAGATCG296600.08.067119114-115
CAGATCG255700.06.991785120
ATAGATC105900.06.5309763120
GCTAGAT17351.8189894E-126.1995964108-109
TAAGATC135550.05.988146116-117
Produced by FastQC (version 0.11.5)