FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830784

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830784
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15143018
Sequences flagged as poor quality0
Sequence length51-126
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT131850.010.419637120
AGTGTAG186050.010.221787120
GTAGGGA437700.09.978196120
TAGGGAA408900.09.756673120
AGAGTGT233950.09.641887120
GAGTGTA204700.09.378413120
CGTGTAG570600.09.252267120
GTGTAGG527200.09.217366120
TGTAGGG473150.09.1672120
GTGTAGA200850.08.960797120
AGATCTC148900.08.944489120
GTCGTGT651450.08.7302065120
TCGTGTA608250.08.413257120
AAGAGTG263450.08.334511120
GTAGATC224800.08.246305120
AGCGTCG859700.08.220449120
CGTCGTG761400.07.8634825120
TGTAGAT239800.07.6053925120
GAGCGTC938150.07.533039120
AAAGAGT331600.07.399562120
Produced by FastQC (version 0.11.5)