FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17948915
Sequences flagged as poor quality0
Sequence length50-126
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC269250.089.10754120
GAGCACA451400.055.486084120
AGAGCAC639750.039.76965120
AAGAGCA975050.026.122694118-119
GAAGAGC1086400.023.731815120
GGAAGAG1330400.020.044086120
CGGAAGA1587750.016.657106118-119
TCGGAAG1652350.016.093662118-119
ATCGGAA1947650.013.688074116-117
GATCGGA1996150.013.536264120
AGATCGG2161100.012.395044120
TAGATCG573700.011.839375120
ACACGTC60450.011.587273120
CACACGT56750.011.470024120
CACGTCT64100.011.148225120
CTAGATC153900.010.987569112-113
CAGATCG749600.010.085265114-115
AAGATCG742300.09.98905120
TTAGATC231150.09.9173118-119
CCTAGAT45750.09.897631120
Produced by FastQC (version 0.11.5)