FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14891857
Sequences flagged as poor quality0
Sequence length52-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC550250.09.562594120
CGTATCA329900.09.52983120
GGTGGTC670800.09.1588955120
TGGTCGC563300.09.010871120
CGCCGTA471450.08.908377120
GTGGTCG614250.08.898349120
GTATCAT361200.08.853513120
GCCGTAT428100.08.591152120
TCGGTGG781150.08.502553120
CCGTATC402250.08.188653120
GCGTCGG114100.08.045295120
CGGTGGT749100.07.913222120
GTCGCCG583350.07.9092135120
TCGCCGT553200.07.7546115120
TCTCGGT879400.07.668599120
ATCTCGG957150.07.647438120
CTCGGTG841900.07.6467237120
AGATCTC1058250.07.5915155120
GATCTCG1032000.07.4357886120
AAAAAAA1162300.07.216475120
Produced by FastQC (version 0.11.5)