FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17202469
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC269200.089.46456120
GAGCACA433400.054.014706120
AGAGCAC587000.040.467533118-119
AAGAGCA879400.027.099012118-119
GAAGAGC979450.024.151833116-117
GGAAGAG1201850.019.679403116-117
CACACGT73550.017.59582120
CGGAAGA1389700.017.165024114-115
TCGGAAG1418250.016.663198114-115
ACACGTC75200.015.987748120
CACGTCT73400.014.814866120
ATCGGAA1683250.014.394392120
GATCGGA1743300.013.731716112-113
AGATCGG1901300.012.668476110-111
TAGATCG395750.012.167219116-117
CTAGATC86950.011.471299116-117
ACGTCTG96550.011.262674120
GCACACG103350.011.262598120
GAGATCG750000.010.358812118-119
TTAGATC129750.010.210434120
Produced by FastQC (version 0.11.5)