FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11497430
Sequences flagged as poor quality0
Sequence length59-126
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA136900.09.728904120
GGTGGTC293850.09.269248120
GTGGTCG270000.09.24366120
TCGGTGG344100.09.170975120
ATCTCGG426000.08.985153120
TCTCGGT385300.08.984444120
TGGTCGC240100.08.7706120
CTCGGTG376300.08.689137120
GGTCGCC247800.08.643334120
CGCCGTA212250.08.621177120
AGATCTC476900.08.541946120
AGTGTAG666900.08.276401120
TAGATCT507150.08.233551120
GATCTCG475350.08.16592120
CCGTATC169450.08.001681120
GTGTAGA644000.07.9278984120
CGGTGGT329950.07.900355118-119
GCCGTAT188400.07.8337297120
GTAGATC627150.07.4999614120
GAGTGTA703800.07.4757586118-119
Produced by FastQC (version 0.11.5)