FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15198423
Sequences flagged as poor quality0
Sequence length50-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT605400.08.930068120
GTGGTCG343150.08.742958120
ATCTCGG536700.08.653299120
GGTGGTC378450.08.640928120
TGGTCGC307700.08.521702120
GTGTAGA782250.08.445282120
GGTCGCC319150.08.253574120
TCGGTGG446950.08.175809120
TCTCGGT488700.07.980745120
AGATCTC583650.07.957761118-119
GATCTCG595000.07.936521120
GAGTGTA861300.07.9209704120
AGAGTGT929300.07.8901935120
AGTGTAG803800.07.868012120
CGGTGGT432350.07.7024684120
CTCGGTG476800.07.6891327120
CGTATCA213800.07.6056085120
TGTAGAT794100.07.601428120
GCGTCGG121650.07.250661120
GTAGATC766450.07.0658727118-119
Produced by FastQC (version 0.11.5)