FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12997619
Sequences flagged as poor quality0
Sequence length50-126
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATCT95950.060.5970844
TCCGATC108800.055.9219063
CGATCTA31000.047.0353285
CTTCCGA150900.042.784281
TTCCGAT207150.030.5872332
CGATCTG71150.028.252025
CGATCTC53500.024.4501955
TCTCGGG18150.022.483488120
CGGTGGG9350.018.61306120
GCGTCGG36600.017.052328120
CGATCTT76550.016.1473645
GATCTAG16200.014.8157826
AAAAAAA2765300.014.04302120
GATCTAA30900.013.7873086
GGGGGTC1752.0918988E-413.714127118-119
GATCTGG52350.013.1813766
GATCTAT44150.012.9113756
GATCTCA41500.012.2899596
GATCTAC25400.011.5755596
CCCCGCA10003.8198777E-1111.4002621
Produced by FastQC (version 0.11.5)