FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830927

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830927
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16447236
Sequences flagged as poor quality0
Sequence length50-126
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC193350.078.64762120
GAGCACA308550.047.04769120
AGAGCAC422250.037.63071120
AAGAGCA657400.023.939428120
GAAGAGC723500.021.914404120
GGAAGAG912550.017.51812120
CGGAAGA1080150.015.451476120
TCGGAAG1092700.014.988055118-119
ATCGGAA1293800.012.825875118-119
GATCGGA1307000.012.679893120
CCGATCT98100.011.9985784
AGATCGG1418700.011.895537120
TAGATCG374150.011.288032116-117
TCCGATC119700.010.5017113
ACACGTC56100.010.207829120
CTAGATC86900.010.052627116-117
CACGTCT56850.09.5877075120
AAGATCG549950.09.405973114-115
CGATCTA25650.09.3560715
CACACGT52600.09.219135118-119
Produced by FastQC (version 0.11.5)