FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12023149
Sequences flagged as poor quality0
Sequence length50-126
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC111200.068.49862120
GAGCACA178450.042.175037120
AGAGCAC235450.032.626812120
AAGAGCA378200.020.569506120
GAAGAGC401450.019.313099118-119
GGAAGAG494700.015.804224120
TCGGAAG570300.013.777505120
CGGAAGA576900.013.630619116-117
ATCGGAA683150.012.33807120
GATCGGA688600.011.834919120
AGATCGG744200.011.137476118-119
TAGATCG180900.09.881129114-115
CTAGATC44900.09.545225120
CGCTAGA10052.0637926E-69.045874120
CCTAGAT19750.08.548597120
AAGATCG360500.08.231889120
TTAGATC84400.08.033177116-117
GAGATCG264700.07.4023314118-119
CAGATCG250950.06.864214116-117
TAAGATC146450.06.11897120
Produced by FastQC (version 0.11.5)