FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14240191
Sequences flagged as poor quality0
Sequence length51-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT341500.09.750137120
TGGTCGC171500.09.585062120
AGTGTAG479000.09.356071120
GGTGGTC217500.08.909468120
GTGTAGA469100.08.875697120
AGAGTGT564700.08.828596120
AGATCTC335950.08.804014120
ATCTCGG319750.08.743469120
GTAGATC471750.08.698666120
GAGTGTA517450.08.602881120
GATCTCG347250.08.396581120
GTGGTCG192850.08.150609120
AAGAGTG628800.08.128969120
TGTAGAT499950.08.124012120
TCGGTGG255400.08.104135120
TCTCGGT286800.08.095436120
CTCGGTG284800.08.025894120
CGGTGGT263550.07.6486487120
GTAGGGA952550.07.539019120
TAGGGAA909650.07.505444120
Produced by FastQC (version 0.11.5)