FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11891884
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC129150.086.513725120
GAGCACA210550.052.59988120
AGAGCAC285700.039.214237120
AAGAGCA431350.026.241755118-119
GAAGAGC489300.022.948444118-119
GGAAGAG618200.018.353716116-117
TCGGAAG712500.015.839801114-115
CGGAAGA729500.015.584661114-115
ATCGGAA821300.013.815089114-115
GATCGGA823100.013.780206112-113
AGATCGG891800.012.671102110-111
TAGATCG178400.012.498786110-111
CTAGATC34450.012.067411110-111
CCTAGAT12500.010.885159116-117
CACACGT42250.010.563899120
GAGATCG350650.010.099749114-115
AAGATCG356000.09.841743112-113
TTAGATC59900.09.716722118-119
CACGTCT40650.09.576405118-119
CAGATCG304900.09.321183110-111
Produced by FastQC (version 0.11.5)