FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12095111
Sequences flagged as poor quality0
Sequence length50-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA975800.012.990159120
CGTATCA416050.09.386663120
TCATTAA323650.09.230592120
CATTAAA334000.08.836788120
CCGTATC491000.08.735753120
GTATCAT413550.08.718108120
GCCGTAT534850.08.445761120
GGTCGCC673000.08.441327120
ATCATTA376300.08.353584120
GTGGTCG751150.08.28186120
TGGTCGC692650.08.167209120
CGCCGTA580300.07.939341120
GGTGGTC804100.07.8334856120
TATCATT441900.07.7922645120
GTCGCCG704450.07.6301603120
TCGCCGT669050.07.594526120
CTCGGTG988750.07.171447120
CGGTGGT881000.07.129295118-119
TCGGTGG923700.07.053014120
TCTCGGT1036200.06.9009438120
Produced by FastQC (version 0.11.5)