FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17610910
Sequences flagged as poor quality0
Sequence length50-126
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG79350.017.692144120
CCGATCT73050.016.672274
TCTCGGG35300.016.6557120
TCCGATC83150.016.3788173
AAAAAAA1792650.013.500566120
CGATCTA22450.013.3620355
CTTCCGA133600.011.3164921
CGTATCA916550.010.610562120
CCGTATC1016450.010.411759120
CGCCGTA1166000.010.254638120
GCCGTAT1100550.010.177616120
GTATCAT918950.09.9887495120
GGTCGCC1483000.09.947844120
TCATTAA715800.09.890126120
TCGCCGT1299600.09.8467455120
GTCGCCG1396000.09.8157215120
ATCATTA819200.09.674408120
TGGTCGC1605450.09.6263275120
GTGGTCG1747300.09.504082120
CATTAAA684050.09.156388120
Produced by FastQC (version 0.11.5)