FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12451082
Sequences flagged as poor quality0
Sequence length56-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT375650.08.379166120
CTCGGTG331750.08.202385120
GTGGTCG213600.08.183604120
TGGTCGC193900.08.116641120
ATCTCGG346250.07.9803314120
GTGTAGA493250.07.9767704120
AGATCTC374900.07.899223120
GTAGATC480250.07.8424735120
GATCTCG380100.07.822764120
GAGTGTA536000.07.710394120
AGTGTAG499350.07.6748257120
TCGGTGG289250.07.538521120
TCTCGGT322000.07.50924118-119
TGTAGAT523350.07.4032154120
GGTGGTC250350.07.3182144120
TAGGGAA863200.07.1676807120
AAGAGTG635100.07.140979120
AGAGTGT580050.07.0730734120
CGGTGGT295000.06.902884120
GGTCGCC197700.06.8668046120
Produced by FastQC (version 0.11.5)