FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13197504
Sequences flagged as poor quality0
Sequence length50-126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC165400.065.50253120
GAGCACA257450.041.104355120
AGAGCAC326450.032.82125118-119
AAGAGCA489850.022.117218120
GAAGAGC555250.020.240124120
GGAAGAG661950.016.877504120
CGGAAGA771150.015.252302120
TCGGAAG780400.014.670218118-119
ATCGGAA919700.012.594214120
GATCGGA941700.012.272957116-117
CTAGATC60350.011.5289120
AGATCGG1058650.011.191569120
TAGATCG211950.011.067403120
CACACGT42400.09.064378120
TTAGATC82600.08.664022120
GAGATCG435450.08.323367118-119
ACACGTC49250.08.207284120
CCTAGAT23050.08.177691118-119
AAGATCG418000.08.132532114-115
CAGATCG388350.07.6612377120
Produced by FastQC (version 0.11.5)