FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11449839
Sequences flagged as poor quality0
Sequence length50-126
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC107400.062.60138120
GAGCACA168050.045.023872120
AGAGCAC220250.033.07743120
AAGAGCA356600.021.226553118-119
GAAGAGC391050.019.231617120
GGAAGAG474400.016.155714120
CGGAAGA544450.014.9651575120
TCGGAAG548300.014.346927118-119
GATCGGA656450.012.242673120
ATCGGAA651700.012.150752118-119
AGATCGG712100.011.1568118-119
TAGATCG182200.010.784993114-115
CTAGATC44050.09.707009116-117
GAGATCG276650.08.424406114-115
AAGATCG275600.08.136499118-119
TTAGATC85200.08.129037120
CAGATCG243600.07.5304184116-117
ACACGTC39650.07.0859494120
CACACGT34950.06.5432525120
ATAGATC104250.06.4500475114-115
Produced by FastQC (version 0.11.5)