FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004831200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004831200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17498744
Sequences flagged as poor quality0
Sequence length51-126
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA3444050.014.222829120
TCTCGGG25950.014.102357120
GCGTCGG71500.012.921529120
CGGTGGG23950.012.274103120
CCGTATC1568800.09.67885120
GCCGTAT1712850.09.523335120
CGTATCA1436600.09.467054120
GTATCAT1392550.09.413255120
CGCCGTA1828450.09.209977120
TCATTAA1154600.09.139733120
ATCATTA1270800.08.894118120
TCGCCGT2014050.08.802103120
GTCGCCG2144450.08.647335120
GGGTGCG25050.08.6221891
TATCATT1445250.08.588488120
CATTAAA1106000.08.548704120
GGTCGCC2263700.08.536328120
TGGTCGC2433100.08.437607120
GGGTCCG7300.00116951238.2186391
GTGGTCG2609800.08.190452120
Produced by FastQC (version 0.11.5)